Scientific Publications

Original works published in international journals referenced in SCI in the past 10 years:

I. Forne, J. Abian and J. Cerda. Fish proteome analysis: model organisms and non-sequenced species. Proteomics 10, 858-872 (2010). doi: 10.1002/pmic.200900609.

M. Gay, M. Carrascal, M. Gorga, A. Parés and J. Abian. Characterization of peptides and proteins in commercial HSA solutions. Proteomics 10, 172-81 (2010). doi: 10.1002/pmic.200900182.

M. Carrascal, M. Gay, D. Ovelleiro, V. Casas, E. Gelpí and J. Abian. Characterization of the human plasma phosphoproteome using Linear IonTrap mass spectrometry and multiple search engines. Journal of Proteome Research 9, 876-884 (2010). doi: 10.1021/pr900780s.

Ponce J, Brea D, Carrascal M, Guirao V, Degregorio-Rocasolano N, Sobrino T, Castillo J, Dávalos A, Gasull T. The effect of simvastatin on the proteome of detergent resistant membrane domains: decreases of specific proteins previously related to cytoskeleton regulation, calcium homeostasis and cell fate. Proteomics 10, 1954-1965 (2010).

Bañón-Maneus E, Diekmann F, Carrascal M, Quintana LF, Moya-Rull D, Bescós M, Ramírez-Bajo MJ, Rovira J, Gutierrez-Dalmau A, Solé-González A, Abián J, Campistol JM. Two-dimensional difference gel electrophoresis urinary proteomic profile in the search of nonimmune chronic allograft dysfunction biomarkers. Transplantation. 89, 548-58 (2010). doi: 10.1097/TP.0b013e3181c690e3.

C. Quero, N. Colomé, C. Rodriguez, P. Eichhorn, M. Posada de la Paz, E. Gelpi and J. Abian. Proteomics of toxic oil syndrome in humans: phenotype distribution in a population of patients. Chemico-Biological Interactions 192, 129-135 (2011). doi: 10.1016/j.cbi.2010.11.001.

I. Forné, B. Castellana, R. Marın-Juez, J. Cerda, J. Abian and J. V. Planas. Transcriptional and proteomic profiling of flatfish (Solea senegalensis) spermatogenesis. Proteomics 11, 2195–2211 (2011). doi: 10.1002/pmic.201000296.

M. Gay, A. Parés, M. Carrascal, P. Bosch-i-Crespo, M. Gorga, A. Mas. J. Abian. Proteomic Analysis of Polypeptides Captured From Blood During Extracorporeal Albumin Dialysis In Patients With Resistant Pruritus. PLoS ONE 6(7): e21850 (2011). doi: 10.1371/journal.pone.0021850.

L Muixí, M Gay, PM Muñoz-Torres, C Guitart, J Cedano, J Abian, I Alvarez and D Jaraquemada. The peptide-binding motif of HLA-DR8 shares important structural features with other type 1 diabetes-associated alleles. Genes and Immunity 12:504-12 (2011). doi: 10.1038/gene.2011.26.

T. Martiáñez, M. Carrascal, A. Lamarca, M. Segura, N. Durany, R. Masgrau, J. Abian, Alejandro Gella. UTP affects the schwannoma cell line proteome through P2Y receptors leading to cytoskeletal reorganization. Proteomics, 12, 145-156 (2012). doi: 10.1002/pmic.201100187.

J. Navascués, C. Pérez-Rontomé, M. Gay, M. Marcos, F. Yang, F.A. Walkerd, A. Desboise, J. Abián, M. Becana. Leghemoglobin green derivatives with nitrated hemes evidence production of highly reactive nitrogen species during aging of legume nodules. Proc.Nat.Acad.Sci. 109, 2660-2665 (2012). doi: 10.1073/pnas.1116559109.

E. J. Pavón, S. García-Rodríguez, E. Zumaquero, R. Perandrés-López, A. Rosal-Vela, A. Lario, V. Longobardo, M. Carrascal, J. Abián, J.L. Callejas-Rubio, N. Ortego-Centeno,.M. Zubiaur, J. Sancho. Increased expression of phosphorylated S100A9 isoforms in mononuclear cells from patients with systemic lupus erythematosus: A proteomic signature for circulating low density granulocytes. Journal of Proteomics. 75, 1778-91 (2012). doi: 10.1016/j.jprot.2011.12.020.

Amézqueta S, Galán E, Fuguet E, Carrascal M, Abián J, Torres JL. Determination of D-fagomine in buckwheat and mulberry by cation exchange HPLC/ESI-Q-MS. Anal Bioanal Chem. 402, 1953-60 (2012). doi: 10.1007/s00216-011-5639-2.

Izquierdo-Álvarez A, Ramos E, Villanueva J, Hernansanz-Agustín P, Fernández-Rodríguez R, Tello D, Carrascal M, Martínez-Ruiz A. Differential redox proteomics allows identification of proteins reversibly oxidized at cysteine residues in endothelial cells in response to acute hypoxia. J Proteomics. 2012 Sep 18;75(17):5449-62.

Pavón EJ, Zumaquero E, Rosal-Vela A, Khoo KM, Cerezo-Wallis D, García-Rodríguez S, Carrascal M, Abian J, Graeff R, Callejas-Rubio JL, Ortego-Centeno N, Malavasi F, Zubiaur M, Sancho J. Increased CD38 expression in T cells and circulating anti-CD38 IgG autoantibodies differentially correlate with distinct cytokine profiles and disease activity in systemic lupus erythematosus patients. Cytokine. 62, 232-43 (2013). doi: 10.1016/j.cyto.2013.02.023.

Amézqueta S, Galán E, Vila-Fernández I, Pumarola S, Carrascal M, Abian J, Ribas-Barba L, Serra-Majem L, Torres JL. The presence of D-fagomine in the human diet from buckwheat-based foodstuffs. Food Chem. 136, 1316-21 (2013). doi: 10.1016/j.foodchem.2012.09.038.

Segura V, Medina-Aunon JA, Guruceaga E, Gharbi SI, González-Tejedo C, Sánchez del Pino MM, Canals F, Fuentes M, Casal JI, Martínez-Bartolomé S, Elortza F, Mato JM, Arizmendi JM, Abian J, Oliveira E, Gil C, Vivanco F, Blanco F, Albar JP, Corrales FJ. Spanish human proteome project: dissection of chromosome 16. J Proteome Res. 12, 112-122 (2013). doi: 10.1021/pr300898u.

Martínez-Bartolomé S, Deutsch EW, Binz PA, Jones AR, Eisenacher M, Mayer G, Campos A, Canals F, Bech-Serra JJ, Carrascal M, Gay M, Paradela A, Navajas R, Marcilla M, Hernáez ML, Gutiérrez-Blázquez MD, Velarde LF, Aloria K, Beaskoetxea J, Medina-Aunon JA, Albar JP. Guidelines for reporting quantitative mass spectrometry based experiments in proteomics. J.Proteomics. 2013 Mar 14, S1874-3919(13) 00102-4.

Collado JA, Alvarez I, Ciudad MT, Espinosa G, Canals F, Pujol-Borrell R, Carrascal M, Abian J, Jaraquemada D. Composition of the HLA-DR-associated human thymus peptidome. Eur J Immunol. 43, 2273-2282 (2013). doi: 10.1002/eji.201243280.

Espinosa G, Collado JA, Scholz E, Mestre-Ferrer A, Kuse N, Takiguchi M, Carrascal M, Canals F, Pujol-Borrell R, Jaraquemada D, Alvarez I. Peptides presented by HLA class I molecules in the human thymus. J Proteomics. 2013 Dec 6;94:23-36.

J. Villanueva, M. Carrascal, J.Abian. Isotope dilution mass spectrometry for absolute quantification in proteomics: concepts and strategies. Journal of Proteomics, 96, 184-199 (2014). doi: 10.1016/j.jprot.2013.11.004.

V.Segura, J.A. Medina-Aunon, M. I Mora, Salvador Martínez-Bartolomé, Joaquín Abian, Kerman Aloria, Oreto Antúnez, Jesús M. Arizmendi,Mikel Azkargorta, S. Barceló-Batllori, Jabier Beaskoetxea, Joan J. Bech-Serra, F.Blanco, M.B. Monteiro, D. Cáceres, F. Canals, M.Carrascal, J.I. Casal, F.Clemente, N.Colomé, Noelia Dasilva, Paula Díaz, Félix Elortza, Patricia Fernández, Manuel Fuentes, Oscar Gallardo, Severine I Gharbi, Concha Gil, Carmen González-Tejedo, María L. Hernáez, Manuel Lombardía, Maria Lopez-Lucendo, Miguel Marcilla, José M. Mato, Marta Mendes, Eliandre Oliveira, Irene Orera, Alberto Pascual-Montano, Gorka Prieto, Cristina Ruiz-Romero, Manuel M Sánchez del Pino, Daniel Tabas-Madrid, Maria L Valero, Vital Vialas, Joan Villanueva, Juan Pablo Albar, and Fernando J.Corrales. Surfing transcriptomic landscapes. A step beyond the annotation of Chromosome 16 proteome. J Proteome Res. 13, 158-172 (2014). doi: 10.1021/pr400721r.

Vialas V, Sun Z, Loureiro Y Penha CV, Carrascal M, Abián J, Monteoliva L, Deutsch EW, Aebersold R, Moritz RL, Gil C. A Candida albicans PeptideAtlas. Journal of Proteomics, 97, 62-68 (2014). doi: 10.1016/j.jprot.2013.06.020.

Navarro, P.; Trevisan-Herraz, M.; Bonzon-Kulichenko, E.; Núñez, E.; Martínez-Acedo, P.; Pérez-Hernández, D.; Jorge, I.; Mesa, R.; Calvo, E.; Carrascal, M.; Hernáez, M.L.; García, F.; Bárcena, J.; Ashman, K.; Abian, J.; Gil, C.; Redondo, J.; Vázquez, J. General Statistical framework for quantitative proteomics by stable isotope labeling. J Proteome Res, 13, 1234-1247 (2014). doi: 10.1021/pr4006958.

Rocha B, Calamia V, Casas V, Carrascal M, Blanco FJ, Ruiz-Romero C. Secretome analysis of human mesenchymal stem cells undergoing chondrogenic differentiation. J Proteome Res. 2014 Feb 7;13(2):1045-54.

M. Badia-Villanueva, P. Carulla, M. Carrascal, J. Abian, M. Llobera, A. Casanovas, M.D. López-Tejero. Lipoprotein lipase isoelectric point isoforms in humans. Biochem Biophys Res Commun. 445, 480-485 (2014). doi: 10.1016/j.bbrc.2014.02.028.

Ó. Gallardo, D. Ovelleiro, M. Gay, M. Carrascal, J. Abian. A collection of Open Source Applications for mass spectrometry data mining. Proteomics. 2014 Oct;14(20):2275-9. doi: 10.1002/pmic.201400124.

Sainz M, Calvo-Begueria L, Pérez-Rontomé C, Wienkoop S, Abián J, Staudinger C, Bartesaghi S, Radi R, Becana M. Leghemoglobin is nitrated in functional legume nodules in a tyrosine residue within the heme cavity by a nitrite/peroxide-dependent mechanism. Plant J. 2015 Mar;81(5):723-35. doi: 10.1111/tpj.12762.

Alvarez I, Collado JA, Colobran R, Carrascal M, Ciudad MT, Canals F, James ED, Kwok WW, Gärtner M, Kyewski B, Pujol-Borrell R, Jaraquemada D. Central T cell tolerance: Identification of tissue-restricted autoantigens in the thymus HLA-DR peptidome. J Autoimmun. 2015 Apr 21. pii: S0896-8411(15)00042-6.

T.D. Nguyen, O. Vidal-Cortes, O. Gallardo, J. Abian and M. Carrascal. LymPHOS 2.0: an update of a phosphosite database of primary human T cells. Database (2015) Vol. 2015: article ID bav11. doi: 10.1093/database/bav115.

T.D. Nguyen, M. Carrascal, O. Gallardo, O. Vidal-Cortes, V. Casas, M. Gay, V.Ch. Phan, J. Abian. The phosphoproteome of Human Jurkat T cell clones upon costimulation with anti-CD3/anti-CD28 antibodies. J. Proteomics 2016, 131, 190-198. doi: 10.1016/j.jprot.2015.10.029.

Scholz E, Mestre-Ferrer A, Daura X, García-Medel N, Carrascal M, James EA, Kwok WW, Canals F, Alvarez I. A comparative analysis of the peptide repertoires of HLA-DR molecules differentially associated to rheumatoid arthritis. Arthritis Rheumatol. 2016 May 9. doi: 10.1002/art.39736.

Vialas V, Sun Z, Reales-Calderón JA, Hernáez ML, Casas V, Carrascal M, Abián J, Monteoliva L, Deutsch EW, Moritz RL, Gil C. A comprehensive Candida albicans PeptideAtlas build enables deep proteome coverage. J. Proteomics 2016, 131, 122-130. doi: 10.1016/j.jprot.2015.10.019.

Vialas V, Colomé-Calls N, Abian J, Aloria K, Alvarez-Llamas G, Antúnez O, Arizmendi JM, Azkargorta M, Barceló-Batllori S, Barderas MG, Blanco F, Casal JI, Casas V, de la Torre C, Chicano-Gálvez E, Elortza F, Espadas G, Estanyol JM, Fernandez-Irigoyen J, Fernandez-Puente P, Fidalgo MJ, Fuentes M, Gay M, Gil C, Hainard A, Hernaez ML, Ibarrola N, Kopylov AT, Lario A, Lopez JA, López-Lucendo M, Marcilla M, Marina-Ramírez A, Marko-Varga G, Martín L, Mora MI, Morato-López E, Muñoz J, Odena MA, de Oliveira E, Orera I, Ortea I, Pasquarello C, Ray KB, Rezeli M, Ruppen I, Sabidó E, Del Pino MM, Sancho J, Santamaría E, Vazquez J, Vilaseca M, Vivanco F, Walters JJ, Zgoda VG, Corrales FJ, Canals F, Paradela A. A multicentric study to evaluate the use of relative retention times in targeted proteomics. J. Proteomics 2016, 152, 138-149. doi: 10.1016/j.jprot.2016.10.014.

Bonjoch L., Casas V., Carrascal M., Closa D. Involvement of exosomes in lung inflammation associated with experimental acute pancreatitis. Journal of Pathology 2016, 240: 235-45. doi: 10.1002/path.4771.

Casas V, Vadillo S, San Juan C, Carrascal M, Abian J. The Exposed Proteomes of Brachyspira hyodysenteriae and B. pilosicoli. Front Microbiol. 2016 Jul 21;7:110. doi: 10.3389/fmicb.2016.01103.

Casanovas A., Pinto R., Carrascal M., Abian J. A large-scale filter-aided sample preparation method (LFASP) for the analysis of the ubiquitinome. Anal. Chem. 2017, 89, 3840-384. doi: 10.1021/acs.analchem.6b04804.

Casas V., Rodríguez-Asiain A., Pinto P., Vadillo S., Carrascal M., Abian J. B. pilosicoli and B. hyodysenteriae proteins recognized by challenged pig sera. Front Microbiol. 2017, May 4;8:72. doi: 10.3389/fmicb.2017.00723.

Baulies A, Montero J, Matías N, Insausti N, Terrones O, Basañez G, Vallejo C, Conde de La Rosa L, Martinez L, Robles D, Morales A, Abian J, Carrascal M, Machida K, Kumar DBU, Tsukamoto H, Kaplowitz N, Garcia-Ruiz C, Fernández-Checa JC. The 2-oxoglutarate carrier promotes liver cancer by sustaining mitochondrial GSH despite cholesterol loading. Redox Biol. 2018; 14:164-17. doi: 10.1016/j.redox.2017.08.022.

Schmitt C., Lenglet H., Yu A., Delaby C., Benecke A., Manceau H., Lefebvre T., Letteron P., Paradis V., Wahlin S., Sandberg S., Harper P., Sardh E., Sandvik A., Hov J., Aarsand A., Chiche L., Bazille C., Scoazec J-Y; To-Figueras J., Carrascal M., Abian J., Driss F., Karim Z., Deybach J-Ch., Puy H, Peoc'h K., Gouya L. Recurrent attacks of acute hepatic porphyria: major role of the chronic inflammatory response in the liver. Journal of Internal Medicine 2018; 284:78-9. doi: 10.1111/joim.12750.

Elena Guillén; Beatriz Bardají; Silvia Ferrer; CArles Brotons; Mark Knepper; Montserrat Carrascal; Joaquim Abian; Jose María Mas; Francesca Calero; José Ballarín; Patricia Fernandez-Llama. Urinary Proteome Analysis Identified Neprilysin and VCAM as Proteins Involved in Diabetic Nephropathy. Journal of Diabetes Research 2018. id:616530. doi: 10.1155/2018/6165303.

Albert Casanovas, Óscar Gallardo, Montserrat Carrascal, Joaquin Abian. TCellXTalk facilitates the detection of co-modified peptides for the study of protein post-translational modification cross-talk in T cells. Bioinformatics 2019, 35: 1404–1413. doi: 10.1093/bioinformatics/bty805.

Barrachina M.N., Sueiro A.M., Casas V., Izquierdo I., Hermida-Nogueira L., Guitián E., Casanueva F.F., Abián J., Carrascal M., Pardo M., García A. A combination of proteomic approaches identifies a panel of circulating extracellular vesicle proteins related to the risk of suffering cardiovascular disease in obese patients. Proteomics 2019, 19, 180024. doi: 10.1002/pmic.201800248.

Irene Izquierdo; Maria N Barrachina; Lidia Hermida-Nogueira; Vanessa Casas; Johannes A Eble; Montserrat Carrascal; Joaquín Abián; Angel Garcia. Platelet membrane lipid rafts protein composition varies following GPVI and CLEC-2 receptors activation. Journal of Proteomics 2019. Accepted 21/01/2019. doi: 10.1016/j.jprot.2019.01.014.

I. Forne, J. Abian and J. Cerda. Fish proteome analysis: model organisms and non-sequenced species. Proteomics 10, 858-872 (2010). doi: 10.1002/pmic.200900609.

M. Gay, M. Carrascal, M. Gorga, A. Parés and J. Abian. Characterization of peptides and proteins in commercial HSA solutions. Proteomics 10, 172-81 (2010). doi: 10.1002/pmic.200900182.

M. Carrascal, M. Gay, D. Ovelleiro, V. Casas, E. Gelpí and J. Abian. Characterization of the human plasma phosphoproteome using Linear IonTrap mass spectrometry and multiple search engines. Journal of Proteome Research 9, 876-884 (2010). doi: 10.1021/pr900780s.

Ponce J, Brea D, Carrascal M, Guirao V, Degregorio-Rocasolano N, Sobrino T, Castillo J, Dávalos A, Gasull T. The effect of simvastatin on the proteome of detergent resistant membrane domains: decreases of specific proteins previously related to cytoskeleton regulation, calcium homeostasis and cell fate. Proteomics 10, 1954-1965 (2010).

Bañón-Maneus E, Diekmann F, Carrascal M, Quintana LF, Moya-Rull D, Bescós M, Ramírez-Bajo MJ, Rovira J, Gutierrez-Dalmau A, Solé-González A, Abián J, Campistol JM. Two-dimensional difference gel electrophoresis urinary proteomic profile in the search of nonimmune chronic allograft dysfunction biomarkers. Transplantation. 89, 548-58 (2010). doi: 10.1097/TP.0b013e3181c690e3.

C. Quero, N. Colomé, C. Rodriguez, P. Eichhorn, M. Posada de la Paz, E. Gelpi and J. Abian. Proteomics of toxic oil syndrome in humans: phenotype distribution in a population of patients. Chemico-Biological Interactions 192, 129-135 (2011). doi: 10.1016/j.cbi.2010.11.001.

I. Forné, B. Castellana, R. Marın-Juez, J. Cerda, J. Abian and J. V. Planas. Transcriptional and proteomic profiling of flatfish (Solea senegalensis) spermatogenesis. Proteomics 11, 2195–2211 (2011). doi: 10.1002/pmic.201000296.

M. Gay, A. Parés, M. Carrascal, P. Bosch-i-Crespo, M. Gorga, A. Mas. J. Abian. Proteomic Analysis of Polypeptides Captured From Blood During Extracorporeal Albumin Dialysis In Patients With Resistant Pruritus. PLoS ONE 6(7): e21850 (2011). doi: 10.1371/journal.pone.0021850.

L Muixí, M Gay, PM Muñoz-Torres, C Guitart, J Cedano, J Abian, I Alvarez and D Jaraquemada. The peptide-binding motif of HLA-DR8 shares important structural features with other type 1 diabetes-associated alleles. Genes and Immunity 12:504-12 (2011). doi: 10.1038/gene.2011.26.

T. Martiáñez, M. Carrascal, A. Lamarca, M. Segura, N. Durany, R. Masgrau, J. Abian, Alejandro Gella. UTP affects the schwannoma cell line proteome through P2Y receptors leading to cytoskeletal reorganization. Proteomics, 12, 145-156 (2012). doi: 10.1002/pmic.201100187.

J. Navascués, C. Pérez-Rontomé, M. Gay, M. Marcos, F. Yang, F.A. Walkerd, A. Desboise, J. Abián, M. Becana. Leghemoglobin green derivatives with nitrated hemes evidence production of highly reactive nitrogen species during aging of legume nodules. Proc.Nat.Acad.Sci. 109, 2660-2665 (2012). doi: 10.1073/pnas.1116559109.

E. J. Pavón, S. García-Rodríguez, E. Zumaquero, R. Perandrés-López, A. Rosal-Vela, A. Lario, V. Longobardo, M. Carrascal, J. Abián, J.L. Callejas-Rubio, N. Ortego-Centeno,.M. Zubiaur, J. Sancho. Increased expression of phosphorylated S100A9 isoforms in mononuclear cells from patients with systemic lupus erythematosus: A proteomic signature for circulating low density granulocytes. Journal of Proteomics. 75, 1778-91 (2012). doi: 10.1016/j.jprot.2011.12.020.

Amézqueta S, Galán E, Fuguet E, Carrascal M, Abián J, Torres JL. Determination of D-fagomine in buckwheat and mulberry by cation exchange HPLC/ESI-Q-MS. Anal Bioanal Chem. 402, 1953-60 (2012). doi: 10.1007/s00216-011-5639-2.

Izquierdo-Álvarez A, Ramos E, Villanueva J, Hernansanz-Agustín P, Fernández-Rodríguez R, Tello D, Carrascal M, Martínez-Ruiz A. Differential redox proteomics allows identification of proteins reversibly oxidized at cysteine residues in endothelial cells in response to acute hypoxia. J Proteomics. 2012 Sep 18;75(17):5449-62.

Pavón EJ, Zumaquero E, Rosal-Vela A, Khoo KM, Cerezo-Wallis D, García-Rodríguez S, Carrascal M, Abian J, Graeff R, Callejas-Rubio JL, Ortego-Centeno N, Malavasi F, Zubiaur M, Sancho J. Increased CD38 expression in T cells and circulating anti-CD38 IgG autoantibodies differentially correlate with distinct cytokine profiles and disease activity in systemic lupus erythematosus patients. Cytokine. 62, 232-43 (2013). doi: 10.1016/j.cyto.2013.02.023.

Amézqueta S, Galán E, Vila-Fernández I, Pumarola S, Carrascal M, Abian J, Ribas-Barba L, Serra-Majem L, Torres JL. The presence of D-fagomine in the human diet from buckwheat-based foodstuffs. Food Chem. 136, 1316-21 (2013). doi: 10.1016/j.foodchem.2012.09.038.

Segura V, Medina-Aunon JA, Guruceaga E, Gharbi SI, González-Tejedo C, Sánchez del Pino MM, Canals F, Fuentes M, Casal JI, Martínez-Bartolomé S, Elortza F, Mato JM, Arizmendi JM, Abian J, Oliveira E, Gil C, Vivanco F, Blanco F, Albar JP, Corrales FJ. Spanish human proteome project: dissection of chromosome 16. J Proteome Res. 12, 112-122 (2013). doi: 10.1021/pr300898u.

Martínez-Bartolomé S, Deutsch EW, Binz PA, Jones AR, Eisenacher M, Mayer G, Campos A, Canals F, Bech-Serra JJ, Carrascal M, Gay M, Paradela A, Navajas R, Marcilla M, Hernáez ML, Gutiérrez-Blázquez MD, Velarde LF, Aloria K, Beaskoetxea J, Medina-Aunon JA, Albar JP. Guidelines for reporting quantitative mass spectrometry based experiments in proteomics. J.Proteomics. 2013 Mar 14, S1874-3919(13) 00102-4.

Collado JA, Alvarez I, Ciudad MT, Espinosa G, Canals F, Pujol-Borrell R, Carrascal M, Abian J, Jaraquemada D. Composition of the HLA-DR-associated human thymus peptidome. Eur J Immunol. 43, 2273-2282 (2013). doi: 10.1002/eji.201243280.

Espinosa G, Collado JA, Scholz E, Mestre-Ferrer A, Kuse N, Takiguchi M, Carrascal M, Canals F, Pujol-Borrell R, Jaraquemada D, Alvarez I. Peptides presented by HLA class I molecules in the human thymus. J Proteomics. 2013 Dec 6;94:23-36.

J. Villanueva, M. Carrascal, J.Abian. Isotope dilution mass spectrometry for absolute quantification in proteomics: concepts and strategies. Journal of Proteomics, 96, 184-199 (2014). doi: 10.1016/j.jprot.2013.11.004.

V.Segura, J.A. Medina-Aunon, M. I Mora, Salvador Martínez-Bartolomé, Joaquín Abian, Kerman Aloria, Oreto Antúnez, Jesús M. Arizmendi,Mikel Azkargorta, S. Barceló-Batllori, Jabier Beaskoetxea, Joan J. Bech-Serra, F.Blanco, M.B. Monteiro, D. Cáceres, F. Canals, M.Carrascal, J.I. Casal, F.Clemente, N.Colomé, Noelia Dasilva, Paula Díaz, Félix Elortza, Patricia Fernández, Manuel Fuentes, Oscar Gallardo, Severine I Gharbi, Concha Gil, Carmen González-Tejedo, María L. Hernáez, Manuel Lombardía, Maria Lopez-Lucendo, Miguel Marcilla, José M. Mato, Marta Mendes, Eliandre Oliveira, Irene Orera, Alberto Pascual-Montano, Gorka Prieto, Cristina Ruiz-Romero, Manuel M Sánchez del Pino, Daniel Tabas-Madrid, Maria L Valero, Vital Vialas, Joan Villanueva, Juan Pablo Albar, and Fernando J.Corrales. Surfing transcriptomic landscapes. A step beyond the annotation of Chromosome 16 proteome. J Proteome Res. 13, 158-172 (2014). doi: 10.1021/pr400721r.

Vialas V, Sun Z, Loureiro Y Penha CV, Carrascal M, Abián J, Monteoliva L, Deutsch EW, Aebersold R, Moritz RL, Gil C. A Candida albicans PeptideAtlas. Journal of Proteomics, 97, 62-68 (2014). doi: 10.1016/j.jprot.2013.06.020.

Navarro, P.; Trevisan-Herraz, M.; Bonzon-Kulichenko, E.; Núñez, E.; Martínez-Acedo, P.; Pérez-Hernández, D.; Jorge, I.; Mesa, R.; Calvo, E.; Carrascal, M.; Hernáez, M.L.; García, F.; Bárcena, J.; Ashman, K.; Abian, J.; Gil, C.; Redondo, J.; Vázquez, J. General Statistical framework for quantitative proteomics by stable isotope labeling. J Proteome Res, 13, 1234-1247 (2014). doi: 10.1021/pr4006958.

Rocha B, Calamia V, Casas V, Carrascal M, Blanco FJ, Ruiz-Romero C. Secretome analysis of human mesenchymal stem cells undergoing chondrogenic differentiation. J Proteome Res. 2014 Feb 7;13(2):1045-54.

M. Badia-Villanueva, P. Carulla, M. Carrascal, J. Abian, M. Llobera, A. Casanovas, M.D. López-Tejero. Lipoprotein lipase isoelectric point isoforms in humans. Biochem Biophys Res Commun. 445, 480-485 (2014). doi: 10.1016/j.bbrc.2014.02.028.

Ó. Gallardo, D. Ovelleiro, M. Gay, M. Carrascal, J. Abian. A collection of Open Source Applications for mass spectrometry data mining. Proteomics. 2014 Oct;14(20):2275-9. doi: 10.1002/pmic.201400124.

Sainz M, Calvo-Begueria L, Pérez-Rontomé C, Wienkoop S, Abián J, Staudinger C, Bartesaghi S, Radi R, Becana M. Leghemoglobin is nitrated in functional legume nodules in a tyrosine residue within the heme cavity by a nitrite/peroxide-dependent mechanism. Plant J. 2015 Mar;81(5):723-35. doi: 10.1111/tpj.12762.

Alvarez I, Collado JA, Colobran R, Carrascal M, Ciudad MT, Canals F, James ED, Kwok WW, Gärtner M, Kyewski B, Pujol-Borrell R, Jaraquemada D. Central T cell tolerance: Identification of tissue-restricted autoantigens in the thymus HLA-DR peptidome. J Autoimmun. 2015 Apr 21. pii: S0896-8411(15)00042-6.

T.D. Nguyen, O. Vidal-Cortes, O. Gallardo, J. Abian and M. Carrascal. LymPHOS 2.0: an update of a phosphosite database of primary human T cells. Database (2015) Vol. 2015: article ID bav11. doi: 10.1093/database/bav115.

T.D. Nguyen, M. Carrascal, O. Gallardo, O. Vidal-Cortes, V. Casas, M. Gay, V.Ch. Phan, J. Abian. The phosphoproteome of Human Jurkat T cell clones upon costimulation with anti-CD3/anti-CD28 antibodies. J. Proteomics 2016, 131, 190-198. doi: 10.1016/j.jprot.2015.10.029.

Scholz E, Mestre-Ferrer A, Daura X, García-Medel N, Carrascal M, James EA, Kwok WW, Canals F, Alvarez I. A comparative analysis of the peptide repertoires of HLA-DR molecules differentially associated to rheumatoid arthritis. Arthritis Rheumatol. 2016 May 9. doi: 10.1002/art.39736.

Vialas V, Sun Z, Reales-Calderón JA, Hernáez ML, Casas V, Carrascal M, Abián J, Monteoliva L, Deutsch EW, Moritz RL, Gil C. A comprehensive Candida albicans PeptideAtlas build enables deep proteome coverage. J. Proteomics 2016, 131, 122-130. doi: 10.1016/j.jprot.2015.10.019.

Vialas V, Colomé-Calls N, Abian J, Aloria K, Alvarez-Llamas G, Antúnez O, Arizmendi JM, Azkargorta M, Barceló-Batllori S, Barderas MG, Blanco F, Casal JI, Casas V, de la Torre C, Chicano-Gálvez E, Elortza F, Espadas G, Estanyol JM, Fernandez-Irigoyen J, Fernandez-Puente P, Fidalgo MJ, Fuentes M, Gay M, Gil C, Hainard A, Hernaez ML, Ibarrola N, Kopylov AT, Lario A, Lopez JA, López-Lucendo M, Marcilla M, Marina-Ramírez A, Marko-Varga G, Martín L, Mora MI, Morato-López E, Muñoz J, Odena MA, de Oliveira E, Orera I, Ortea I, Pasquarello C, Ray KB, Rezeli M, Ruppen I, Sabidó E, Del Pino MM, Sancho J, Santamaría E, Vazquez J, Vilaseca M, Vivanco F, Walters JJ, Zgoda VG, Corrales FJ, Canals F, Paradela A. A multicentric study to evaluate the use of relative retention times in targeted proteomics. J. Proteomics 2016, 152, 138-149. doi: 10.1016/j.jprot.2016.10.014.

Bonjoch L., Casas V., Carrascal M., Closa D. Involvement of exosomes in lung inflammation associated with experimental acute pancreatitis. Journal of Pathology 2016, 240: 235-45. doi: 10.1002/path.4771.

Casas V, Vadillo S, San Juan C, Carrascal M, Abian J. The Exposed Proteomes of Brachyspira hyodysenteriae and B. pilosicoli. Front Microbiol. 2016 Jul 21;7:110. doi: 10.3389/fmicb.2016.01103.

Casanovas A., Pinto R., Carrascal M., Abian J. A large-scale filter-aided sample preparation method (LFASP) for the analysis of the ubiquitinome. Anal. Chem. 2017, 89, 3840-384. doi: 10.1021/acs.analchem.6b04804.

Casas V., Rodríguez-Asiain A., Pinto P., Vadillo S., Carrascal M., Abian J. B. pilosicoli and B. hyodysenteriae proteins recognized by challenged pig sera. Front Microbiol. 2017, May 4;8:72. doi: 10.3389/fmicb.2017.00723.

Baulies A, Montero J, Matías N, Insausti N, Terrones O, Basañez G, Vallejo C, Conde de La Rosa L, Martinez L, Robles D, Morales A, Abian J, Carrascal M, Machida K, Kumar DBU, Tsukamoto H, Kaplowitz N, Garcia-Ruiz C, Fernández-Checa JC. The 2-oxoglutarate carrier promotes liver cancer by sustaining mitochondrial GSH despite cholesterol loading. Redox Biol. 2018; 14:164-17. doi: 10.1016/j.redox.2017.08.022.

Schmitt C., Lenglet H., Yu A., Delaby C., Benecke A., Manceau H., Lefebvre T., Letteron P., Paradis V., Wahlin S., Sandberg S., Harper P., Sardh E., Sandvik A., Hov J., Aarsand A., Chiche L., Bazille C., Scoazec J-Y; To-Figueras J., Carrascal M., Abian J., Driss F., Karim Z., Deybach J-Ch., Puy H, Peoc'h K., Gouya L. Recurrent attacks of acute hepatic porphyria: major role of the chronic inflammatory response in the liver. Journal of Internal Medicine 2018; 284:78-9. doi: 10.1111/joim.12750.

Elena Guillén; Beatriz Bardají; Silvia Ferrer; CArles Brotons; Mark Knepper; Montserrat Carrascal; Joaquim Abian; Jose María Mas; Francesca Calero; José Ballarín; Patricia Fernandez-Llama. Urinary Proteome Analysis Identified Neprilysin and VCAM as Proteins Involved in Diabetic Nephropathy. Journal of Diabetes Research 2018. id:616530. doi: 10.1155/2018/6165303.

Albert Casanovas, Óscar Gallardo, Montserrat Carrascal, Joaquin Abian. TCellXTalk facilitates the detection of co-modified peptides for the study of protein post-translational modification cross-talk in T cells. Bioinformatics 2019, 35: 1404–1413. doi: 10.1093/bioinformatics/bty805.

Barrachina M.N., Sueiro A.M., Casas V., Izquierdo I., Hermida-Nogueira L., Guitián E., Casanueva F.F., Abián J., Carrascal M., Pardo M., García A. A combination of proteomic approaches identifies a panel of circulating extracellular vesicle proteins related to the risk of suffering cardiovascular disease in obese patients. Proteomics 2019, 19, 180024. doi: 10.1002/pmic.201800248.

Irene Izquierdo; Maria N Barrachina; Lidia Hermida-Nogueira; Vanessa Casas; Johannes A Eble; Montserrat Carrascal; Joaquín Abián; Angel Garcia. Platelet membrane lipid rafts protein composition varies following GPVI and CLEC-2 receptors activation. Journal of Proteomics 2019. Accepted 21/01/2019. doi: 10.1016/j.jprot.2019.01.014.

Book chapters in the last 10 years:

J. Abian, M. Gay, M. Carrascal. Estrategias en proteómica de alto rendimiento (high throughput). Caracterización de proteomas. LC-MS/MS. FDR. Manual de Proteómica. Sociedad Española de Proteómica (2014).

M. Gay, M. Carrascal, J. Abian. Analizadores de masa en proteómica. Principios operacionales y parámetros de rendimiento. I. Triple cuadrupolo. QTrap. Manual de Proteómica. Sociedad Española de Proteómica (2014).

M. Carrascal, J. Abian y M. Gay. Fosfoproteómica. Técnicas de enriquecimiento de fosfopéptidos. Métodos espectrométricos para la identificación de fosfopéptidos. Manual de Proteómica. Sociedad Española de Proteómica (2014).

M. Becana, J. Navascués, C. Pérez-Rontomé, F. Ann Walker, A. Desbois, J. Abian. Leghemoglobins with Nitrated Hemes in Legume Root Nodules. Biological Nitrogen Fixation, Vol.2. (Frans J. de Bruijn Ed.) Chapter 70, pp 702-713, John Wiley & Sons, Inc. (2015).

J. Abian, M. Gay, M. Carrascal. Estrategias en proteómica de alto rendimiento (high throughput). Caracterización de proteomas. LC-MS/MS. FDR. Manual de Proteómica. Sociedad Española de Proteómica (2014).

M. Gay, M. Carrascal, J. Abian. Analizadores de masa en proteómica. Principios operacionales y parámetros de rendimiento. I. Triple cuadrupolo. QTrap. Manual de Proteómica. Sociedad Española de Proteómica (2014).

M. Carrascal, J. Abian y M. Gay. Fosfoproteómica. Técnicas de enriquecimiento de fosfopéptidos. Métodos espectrométricos para la identificación de fosfopéptidos. Manual de Proteómica. Sociedad Española de Proteómica (2014).

M. Becana, J. Navascués, C. Pérez-Rontomé, F. Ann Walker, A. Desbois, J. Abian. Leghemoglobins with Nitrated Hemes in Legume Root Nodules. Biological Nitrogen Fixation, Vol.2. (Frans J. de Bruijn Ed.) Chapter 70, pp 702-713, John Wiley & Sons, Inc. (2015).